[monodoc] Changes to support new-style iOS documentation:

[monodoc] Changes to support new-style iOS documentation:

- Fixed bug in creating CREF strings.
- Refactored XML file processing for customization during new style iOS assembly. This was done through the new file source interface, which lets you use dependency injection to customize the process.
- Added the ability to rewrite CREF references when assembling docs that use native types. Also, the ability to handle dropped namespaces.